PortPocket 3D Culture Slide

Change the medium.
Keep every spheroid.

An 18-well, slide-format 3D culture device with a built-in pipetting pocket. An internal partition keeps the pipette tip and its flow away from the microwells, so spheroids and organoids stay where you seeded them.

Request evaluation samplesSee how it works
Brightfield, ×40. Spheroids 24 h after a full medium exchange through the PortPocket. Seeding 1 × 105 cells per well. Internal data.
Brightfield image of spheroids seated in a hexagonal array of microwells
Why PortPocket

3D culture fails quietly, one medium change at a time.

Spheroids and organoids sit loose in their wells. Every aspiration pulls on them. Over a multi-week culture some lift out, some fuse, and each well drifts a little further from its neighbours. By the endpoint, part of the variability in your data comes from handling rather than biology.

Conventional microwell or U-bottom plate

8 of 8 microwells occupied
The tip works directly above the culture.

PortPocket well

5 of 5 microwells occupied
The tip goes into a separate pocket behind the partition.
Schematic illustration of a single medium exchange.
18
independent wells per slide
~540
microwells per slide, about 30 per well
75 × 25 mm
standard microscope slide footprint
5–10%
spheroid loss in internal tests, vs. 40–50% reported for standard 3D plates
How it works

One well, two zones.

Each of the 18 wells is divided by a curved internal wall. On one side, a field of U-bottom microwells holds the culture. On the other, a deeper, lens-shaped pocket takes the pipette. The two share the same medium but not the same flow.

Culture zone Internal partition PortPocket U-bottom microwells
Cross-section of a single well (schematic, not to scale). Fresh medium is dispensed into the pocket and reaches the culture zone over the partition.
Top view. Microwells on the left, the partition and PortPocket on the right.
Step 1

Seed

Pipette the cell suspension into the culture zone. Cells settle into the U-bottom microwells by gravity.

Step 2

Aggregate

Within 24–48 h, cells self-assemble into one compact aggregate per microwell. No coating or scaffold needed.

Step 3

Exchange medium

Place the tip in the PortPocket and aspirate or dispense there. The partition keeps flow off the microwells.

Step 4

Treat and image

Add compounds through the same pocket. Image the slide directly under brightfield or fluorescence.

Step 5

Harvest or fix

Collect spheroids from the open wells for downstream assays, or fix and stain them in place.

CAD section through one row of six wells. The pipette tip rests in the pocket at the far right.
CAD section through one row of six wells. The pipette tip rests in the pocket at the far right.
Looking into a well: the microwell array, the partition and the pocket behind it.
Looking into a well: the microwell array, the partition and the pocket behind it.
Product design

Built around the slide you already use.

PortPocket keeps the 75 × 25 mm footprint of a glass microscope slide, so it drops into standard stage holders and slide racks. The body is moulded in one piece from optically clear liquid silicone rubber. A clear lid with guide pins lets slides stack without shifting.

Two slides stacked, lid on top. Guide holes and round ribs at the corners keep stacks aligned in the incubator.
Two slides stacked, lid on top. Guide holes and round ribs at the corners keep stacks aligned in the incubator.
Lid shown transparent. The microwell floor of all 18 wells, labelled A1–C6, is visible from above.
Lid shown transparent. The microwell floor of all 18 wells, labelled A1–C6, is visible from above.
Production sample. The microwell floor is visible through the side wall of each well.
Production sample. The microwell floor is visible through the side wall of each well.
Slide and lid as supplied.
Slide and lid as supplied.
Underside view showing the 3 × 6 well layout.
Underside view showing the 3 × 6 well layout.

Clear silicone body

High-transparency liquid silicone rubber (LSR), 70 Shore A, low volatile content grade. Suitable for brightfield and common fluorescence channels.

18 conditions per slide

Wells are fully independent. Run a 6-point dose response in triplicate, or three cell lines side by side, on one slide.

Ready to use

Gamma-irradiated and individually packed. Open, seed and culture. No coating, washing or pre-conditioning.

Performance data

The same spheroids, before and after a medium exchange.

We imaged a well on day 1, then again 24 h after a full medium wash through the PortPocket. The microwells stayed occupied and the aggregates kept their position and shape.

Day 1, before exchange.
Day 1, before exchange.
Day 2, 24 h after medium exchange through the PortPocket.
Day 2, 24 h after medium exchange through the PortPocket.
×100. One aggregate forms per microwell.
×100. One aggregate forms per microwell.
×400. Cells compacting at the base of a microwell.
×400. Cells compacting at the base of a microwell.
The PortPocket. Loose single cells collect here and leave with the next exchange.
The PortPocket. Loose single cells collect here and leave with the next exchange.

Brightfield microscopy, scale bars 200 µm. Seeding 1 × 105 cells per well. Internal data, 2026.

How it compares

FormatTypical suppliersWell-to-well CVSpheroid recoveryLoss during feedingMain limitation
Standard 3D plates (ULA, U-bottom)Corning, SPL, Greiner20–30%150–60%340–50%6Flow disturbs cultures at every exchange
Hydrogel-based kitsCorning, R&D Systems20–30%150–65%420–30%4Losses during gel digestion and recovery
Organ-on-chip systemsEmulate, MEPSGEN15–25%260–70%515–25%7Cost, dedicated hardware, training
PortPocket 3D Culture SlideNano Miracle10–15%70–85%5–10%Early field validation under way

PortPocket values: internal data. Reference ranges: (1) Zhu et al., Sci. Rep. 15, 9142 (2025). (2) Piergiovanni et al., Lab Chip 21, 2857 (2021). (3) Caliari & Burdick, Nat. Methods 13, 405 (2016). (4) Kozlowski et al., Commun. Biol. 4, 1387 (2021). (5) Velázquez-García et al., Sci. Rep. 9, 6199 (2019). (6) Wardwell-Swanson et al., 3D Cell Culture White Paper, InSphero (2021). (7) Li et al., Protein Cell 16, pwaf058 (2025).

Applications

From ocular cell models to drug screens.

Grid of fluorescent ocular co-culture spheroids
Co-culture spheroids from ocular cell samples, prepared at different mixing ratios (top) and seeding orders (bottom). Two-colour fluorescence labelling. Application data from our development programme with ophthalmology research partners.

Ophthalmic disease models

Co-culture spheroids from ocular cell samples for diabetic retinopathy and other retinal disease research.

Toxicity and drug screening

18 wells per slide for dose-response series, with in-place imaging at every time point.

Patient-derived models

Workflows developed with clinical partners for patient-derived ocular, synovial and tumour cells.

New approach methodologies

Reproducible human-cell 3D data to support non-animal preclinical packages.

PortPocket Analyzer

Images in, numbers out.

PortPocket Analyzer is our AI image-analysis pipeline for 3D cultures grown on the slide. It turns the brightfield and fluorescence images you already collect into consistent, reviewer-independent read-outs.

Available now as an analysis service. Software access for partner laboratories from 2027.

ModuleWhat it doesInternal benchmark
Growth monitorTransformer-based anomaly detection on day 1–7 brightfield time series. Flags wells whose size, shape or density departs from normal growth.AUC 0.87
Viability predictorU-Net model that estimates viability from Live/Dead and Calcein-AM fluorescence images, calibrated against MTT.R² 0.85
MAE 5–8%

Benchmarks from internal validation on prototype datasets. Independent validation planned for 2027.

Specifications

Technical data

ProductPortPocket 3D Culture Slide
Format75 × 25 mm, microscope slide footprint
Height10.5 mm body
Wells18 independent wells, 3 × 6 layout (A1–C6)
MicrowellsAbout 30 U-bottom microwells per well in a hexagonal array; about 540 per slide
Medium exchangeIntegrated PortPocket in every well, separated from the culture zone by an internal partition
MaterialOptically clear liquid silicone rubber (LSR), 70 Shore A
SurfaceCoating-free; no ECM or anti-adhesion pre-treatment required
LidClear lid with stacking guides
WeightAbout 5 g
SterilityGamma-irradiated, individually packed
ImagingBrightfield, phase contrast and fluorescence on inverted or upright microscopes with a slide holder
Intended useFor research use only. Not for use in diagnostic procedures.
Empty microwell array before seeding.
Empty microwell array before seeding.
PortPocket and partition wall, empty well.
PortPocket and partition wall, empty well.

Ordering information

Cat. No.DescriptionPack size
NM-PP18-01PortPocket 3D Culture Slide, 18 wells, with lid, sterile1 slide
NM-PP18-05PortPocket 3D Culture Slide, 18 wells, with lid, sterile5 slides
NM-PP18-20PortPocket 3D Culture Slide, 18 wells, with lid, sterile20 slides
NM-PPA-SPortPocket Analyzer image-analysis service, per studyQuote

Quality and testing

Biocompatibility testing is in progress with KTR (Korea Testing & Research Institute): ISO 10993-5 cytotoxicity, elution, residual volatiles and sterility. An ISO 13485-based quality management system is being established ahead of diagnostic-grade versions.

Intellectual property

PortPocket structure: Korean patent application 10-2026-0112592 (pending). Related applications cover AI-based spheroid detection and drug-response prediction (10-2025-0207881) and multi-disease spheroid kits (10-2025-0207911). PCT filing in preparation.

Company

We build tools that make cell-based data easier to trust.

Nano Miracle is a Korean deep-tech company working where optical sensing, image analysis and biology meet. Our team develops AI models and data pipelines that read biological signals consistently, from optical sensor data to microscopy images of 3D cultures.

PortPocket was co-developed with our partner AiderBio, whose 3D culture and organoid team designed the partitioned well. Together we pair the hardware with our analysis software and support researchers outside Korea, from first samples to routine use.

Hardware

PortPocket 3D Culture Slide, available now. A 96-well SBS-format version is in development.

Software

PortPocket Analyzer for growth monitoring and viability prediction.

Research network

Development with Korean clinical partners in ophthalmology and university hospitals.

Contact

Try PortPocket in your lab.

We send evaluation samples to qualified research groups and work with distributors and OEM partners worldwide. Tell us about your cells and your assay, and we will suggest a starting protocol.

Gyubok Lee, Ph.D., Chief Executive Officer
Nano Miracle Inc.
Headquarters  Room 201-54, 2F, 152-14 Baesan-ro, Iksan-si, Jeonbuk State, Republic of Korea
R&D Center  Room 302, 17-14 Dongma-ro 3-gil, Songpa-gu, Seoul, Republic of Korea